These genes were selected based on phylogenetic analysis and one gene from each cluster was selected for expression analysis.
Proper sequence alignment is essential for any assignment method based on phylogenetic analysis, either distance- or parsimony-based [42].
Recently, a fourth subfamily of HDACs was added based on phylogenetic analysis (Shirakawa et al., 2013).
The existence of homologous insertases in archaea has been proposed based on phylogenetic analysis.
Based on phylogenetic analysis of the internal transcribed spacer region sequence, it was identified as Aspergillus niger.
Yeast isolates OBS1 and OBS2 were characterized based on phylogenetic analysis as P. kudriavzevii and S. cerevisiae.
Recent research using molecular methods has shown that the two morphotypes are likely to be separate species based on phylogenetic analysis with multiple gene regions.
Based on phylogenetic analysis, the virus strains were assigned into three putative partitivirus species: HetRV1 (Heterobasidion RNA virus 1), HetRV4, and HetRV5.
However, based on phylogenetic analysis of ORF L1, FcaPV-3 was most closely related to the tau-PVs CPV-2 and CPV-7.
Initial classification of Hox-proteins was based on phylogenetic analysis of the 60 amino acid homeodomain.
Subsequently, in 2004, T. roseum was reassigned to the phylum Chloroflexi based on phylogenetic analysis of 16S rRNA genes [9].
