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For many years gene mapping studies have been performed through linkage analyses based on pedigree data.
Accuracies of genomic predictions for SURV in Jersey were rarely higher than those based on pedigree data.
Each w term indicates one of the four possible additive effects in a that could be observed in the F2-individual based on pedigree data.
The relationship matrix based on pedigree data dates back to a base population, for which parents are unknown and which is considered unrelated, unselected and non-inbred.
Similarly, w i j k p m is a row vector of length L, indicating which dominance effect could be possible in the offspring based on pedigree data.
This parent-offspring test should not only consider parent-offspring pairs based on pedigree data, but also those based on SNP information.
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These methods are based on pedigree information, or on molecular data when pedigree information is not available.
Traditional BLUP ignores genomic data and relies on information from ancestors using a numerator relationship matrix (A) based on pedigree information.
The 8 accessions used in the analysis were selected as the most diverse materials (based on pedigree, phenotype data and some initial marker analysis) from a pool of breeding lines and germplasm collection available to us.
The relationship matrix was either based on pedigree or genomic data.
The presence of biallelic QTLs in the genome are tested simultaneously with QTL alleles carried by founders by inference on QTL genotype probabilities for any members of the pedigree based on pedigree, marker and phenotype data.
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