Sentence examples for based on pathway presence from inspiring English sources
HUMAnN uses an integer optimization algorithm that conservatively computes a parsimonious minimum set of reactions along KEGG pathways based on pathway presence, absence or completion [ 6, 7].
This filtering may be achieved either by ranking as has been previously discussed, clustering of results based on pathway similarity or overlap [68], allowing the user to exclude pathways based on the presence or absence of specific intermediates that the user chooses to avoid, or some mixture of all of these.
Their similarity score is derived from pathway similarity based on pathway components (see reference for details).
The pathway presence was defined based on the presence of all components of the pathway in a particular genome.
In fact, on increasing the Fe-dopant level, Fe always concentrated along the grain boundary region (as confirmed by SEM/EDS), the total conductivity increased and each individual impedance arc decreased, in agreement with predictions based on the presence of a parallel pathway for electronic transport.
The ability of Shewanella species to grow on a panel of sugar substrates was predicted based on the presence or absence of the respective reconstructed pathways in their genomes.
Based on the presence of these homologous structural genes, the anthocyanin biosynthetic pathway in B. rapa was then established.
TargetP determines the putative subcellular localization based on the presence of chloroplast transit peptide, mitochondrial targeting peptide, or secretory pathway signal peptide.
The high degree of concordance between the consultant's view of management and the MDM consensus could be biased in that patients were selected based on the presence of a clearly documented consultant decision regarding the treatment pathway before MDM.
The Pathway Tools software matched 574 of these genes to MetaCyc reactions based on the presence of an EC number in the gene annotation.
Predict secreted proteins based on the presence of a signal peptide (SP) or by non-classical secretory pathways (NC) (Scoring function > 0.5).
