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Among the pathway subgroups based on pathway hierarchy 2 (Additional file 3), the pathway of Ribosome was the most unigenes (662), followed by Carbohydrate metabolism 328), Biosynthesis of amino acids 327), Protein processing in endoplasmic reticulum (288) (Additional file 3).
There are five KEGG categories based on pathway hierarchy 1 (Additional file 3) including Cellular Processes (A) (1538), Environmental Information Processing (B) (1368), Genetic Information Processing (C) (2560), Metabolism (D) (6214), and Organismal Systems (E) (2536) respectively.
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Functional association analysis performed by ToppCluster based on pathway networks showing enriched terms from Gene Ontology and pathways.
Where more than one screening value was available, we selected one based on a hierarchy of preference.
The full covariance model (Fig. 2a, d) defined the structural model based on the sex hierarchy pathway, and estimated parameters for each path and all covariances between independent genes.
Visual thinking is based on a hierarchy of skills.
Social devices reproduction control basically structured the sexes reports themselves based on sexual hierarchy.
Finally, we propose an energy efficient fusion-driven routing (EEFR) based on cluster hierarchy.
This was the expected profile for Typhimurium based on its hierarchy and MCT assignments (Fig. 5).
A SNP was defined relative to a pair of genomes based on a hierarchy of functional locations.
Secondly, the mapping is extended along the true paths of the terms based on GO hierarchy.
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