Sentence examples for based on pairwise similarity from inspiring English sources
Frickey, T. & Lupas, A. CLANS: a Java application for visualizing protein families based on pairwise similarity.
There are many different algorithms for computing similarity measures between compounds and for aggregating compounds into clusters based on pairwise similarity measures, leading to arbitrarily many different classification hierarchies, even given the same compound collection as input.
Recently, Gray et al. [112] proposed a multi-modality classification framework, in which manifolds are constructed based on pairwise similarity measures derived from random forest classifiers, and achieved classification accuracies of 89 % between AD and NC, and 75%% between MCI and NC.
The algorithm for detecting orthologous relationships is based on pairwise similarity scores which are by default calculated with BLASTP.
Inparanoid is based on pairwise similarity values calculated in four ways: A/B, B/A, A/A, B/B.
In this approach, sequences are grouped ("clustered") based on pairwise similarity measures such as BLAST E-values [ 18].
Cluster analysis is a fundamental problem in pattern recognition where objects are categorized into groups or clusters based on pairwise similarities between those objects such that two criteria, homogeneity and separation, are achieved [21].
Subsequent principal coordinates analyses based on pairwise nucleotide similarities of the six groups showing a similar behavior revealed that in five out of six cases the reconstructed genome represented a central genome within the group (Additional file 1: Figure S1).
Of the 17 pfam families that were common to all four genomes, we considered 12 to represent a 'conserved core genome', and five to represent a 'variable core genome' based on pairwise sequence similarities.
For example, a five-member gene family could have been generated through four gene duplication events, although BLASTP would yield ten gene duplicates pairs based on pairwise comparisons of sequence similarity.
