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The analysis is based on pairwise relationships of potency difference and structure-similarity which were calculated from the combination of four different 2D and 3D structure representations.
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Finally, pedigree-wise IBD sharing can be constructed based on pairwise IBD relationships.
> -wrap-foot> In this work, we proposed an efficient method IBD-Groupon to detect group-wise IBDs in multiple individuals simultaneously based on pairwise IBD relationships.
Results: In this work, we developed an efficient method IBD-Groupon, which detects group-wise IBD tracts based on pairwise IBD relationships, and it is able to address all the drawbacks aforementioned.
Briefly, OPTIC builds phylogenetic trees for gene families by first assigning orthology relationships based on pairwise orthologs computed using PhyOP (Goodstadt and Ponting, 2006).
In protein similarity networks, proteins are represented as points and similarity relationships (based on pairwise structure or sequence alignments that are better than a threshold) are represented as edges connecting the points.
The algorithm for detecting orthologous relationships is based on pairwise similarity scores which are by default calculated with BLASTP.
The algorithm for assigning orthologous relationships is based on pairwise similarity scores which are by default calculated with the BLASTP program.
The algorithm for detecting orthologous relationships is based on pairwise similarity scores which are by default calculated with the BLASTP program.
Relationships between species based on pairwise genetic distance at 676 unigenes (27929 SNPs).
However, as mentioned in the text, we also used distance trees based on pairwise Z-scores of structural comparisons to infer evolutionary relationships between different superfamilies.
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