Sentence examples for based on pairwise alignments from inspiring English sources

However, the orthology assignments made in these early studies were of limited reliability since they were based on pairwise alignments [69], [70], [72] [74] or, in one case, on a phylogenetic analysis that encompassed too narrow a sample of bilaterian homeobox genes [71].

(d) Network phylogeny inferred among the five STB isolates subjected to complete genome sequence analysis and six selected MTBC (M. tuberculosis and M. africanum) genome sequences by NeighborNet analysis, based on pairwise alignments of whole-genome SNP data.

These clusters were then used as input to an average linkage clustering using MOTHUR [39] based on pairwise alignments using ESPRIT [40].

Based on pairwise alignments, amino acid identity was calculated for homologous genes.

Two reads from both ends of a clone were merged using the Codon Code Aligner based on pairwise alignments.

To exclude this possibility, we examined the average amino acid similarity between elements based on pairwise alignments.

Analysis of the relationship between the different members is based on pairwise alignment, compilation, and comparison of their SET-domains.

Enables superposition of PDB chains based on pairwise alignment inferred from the alignments to the query.

ANI values were calculated based on pairwise alignment of genome stretches using the JSpecies software with BLAST algorithm [ 17].

For the identification of distantly related sequences, methods that exploit profiles (i.e., position-specific descriptions of the consensus of a multiple sequence alignment) are more sensitive than those based on pairwise alignment such as BLAST and FASTA.

Previously, genome similarities were calculated based on pairwise global alignments in PASC.