Sentence examples for based on pair wise from inspiring English sources
About 50 pairs of homologous genes were identified based on pair wise comparison of protein sequences using the program bl2seq [16] (run at a stringent threshold E-value of 6 · 10−13).
Previous studies of the occurrence of positive selection based on pair wise comparisons have revealed a very low occurrence of positive selection.
NJ trees were based on pair wise distances between amino acid sequences using the programs NEIGHBOR and PROTDIST (Dayhoff option) of the PHYLIP 3.6 package [ 91].
NJ trees were based on pair wise distances between amino acid sequences using the programs NEIGHBOR and PROTDIST (Dayhoff option) of the PHYLIP 3.6 package [ 42].
Marker assays using the 1,536 SNPs from the "Universal Soy Linkage Panel", estimated an average of 458 SNPs for each pair of soybean cultivars based on pair wise comparisons of 96 elite cultivars [ 33].
A recent re-implementation of M-Coffee in the SeqAn (Doering et al., 2008) alignment library shows that the multiple alignment step of M-Coffee is about twice faster than standard consistency-based aligners based on pair-wise alignments like ProbCons or Promals (Rausch et al., 2008).
A sequence was retained in a contig if it matched at least one sequence already in the contig based on pair-wise BLAST [ 63], with a percentage identity threshold of 90%.
In contrast to family-based methods in which first sequences are clustered into groups based on pair-wise comparisons, for instance using MCL clustering, the phylome approach uses one genome as a seed to find putative homologs, just as a phylogeneticist would do to reconstruct the evolution of a protein of interest.
The tree topology based on pair-wise Fst-values was largely confirmed with UniFrac-based clustering of countries calculated based on phylogenetic trees using nucleic-acid and deduced amino-acid sequences.
Selectivity is assessed based on pair-wise compound potency ratios.
Genetic linkage maps, based on pair-wise distance estimates, have emerged as pivotal tools for locating genes or QTLs.
