Sentence examples for based on overall gene from inspiring English sources
Because the key metabolic genes comprised a small percentage of the total genome, we created a cluster dendrogram based on overall gene presence/absence (Fig. 3c).
Based on overall gene expression, the closest appears to be the trio of PC3, DU145 and CL1.
Hierarchical clustering of strains based on overall gene content yielded a dendrogram with 6 clusters, designated A-F.
In both bird species, the sex chromosomes (Z) had the expected density of N-mt genes based on overall gene density.
The cluster dendrograms include all expressed genes for ST77 (D ), ST111 (E ) and 764 (F ), showing the Euclidean distance between each sample based on overall gene expression.
Of note, identical sets of spacers were conserved across cluster F strains (BL23, BD-II and LC2W) indicating very close genetic relatedness, which is also reflected in strain clustering based on overall gene content and MLST analysis.
This allowed us to reliably investigate variations in expression of 2 162 genes in our cell lines and to group the different samples based on overall similarity in gene expression patterns.
Compared to random expectations based on overall abundance of genes, some TA pairs are either underrepresented (e.g. PIN-Xre or AbrB-RelE) or conspicuously absent (for instance, pairs involving exclusive toxin partners of Xre or exclusive antitoxin partners of PIN) whereas other pairs are overrepresented (AbrB-Fic is over three times more frequent than expected).
This tool ranks the biological significance of gene groups based on overall EASY scores of all enriched annotation terms (da Huang et al., 2009).
The enrichment score ranks the biological significance of gene groups based on overall EASE scores (modified Fisher's exact test) of all enriched annotation terms, thereby accounting for the relative importance of the groups as part of a probing rather than strictly statistical analysis.
Based on overall domain structures and HMG box sequences, the Acropora Sox genes considered here clearly fall into four of the five major Sox classes.
