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Furthermore, molecular phylogenies based on other gene markers, albeit with sparse taxon sampling, have produced rather different results compared to SSU rRNA phylogenies [22], [28], [29].
All species of Geoglossum, except for G. glutionosum which is likely to be transferred to Trichoglossum based on other gene phylogenies, were moderately supported as a joint monophyletic lineage (BPP = 0.91).
This is consistent with current ascomycete systematics based on other gene sequences.
Similar phylogenetic trees were obtained based on other gene sequences, such as PrM (data not shown).
The F gene based RT-PCR developed by Forsyth and Barrett [ 9] has gained much popularity, though PCR tools based on other gene targets have become available [ 10].
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And the trees based on other genes show different maps that do not agree with the ribosomal RNA map.
A second blow is that with the full genome sequence in hand for Aquifex and a dozen other microbes, biologists can draw up family trees based on other genes, besides the ribosomal RNA gene that provided the original map.
Within the fungi, molecular phylogenetic analyses have suggested a relationship between microsporidia and either ascomycetes and basidiomycetes [19], [20] based on some genes, or with zygomycetes based on other genes [21], [22].
For example, PCR restriction fragment length polymorphism (RFLP) tools based on the small subunit (SSU) rRNA gene are frequently used in genotyping Cryptosporidium spp. because they have higher sensitivity and detect more species than PCR-RFLP tools based on other genes (7 ).
Candidate gene content for the custom array was developed by a voting scheme based on other "cancer gene" lists available on the World Wide Web on November 6, 2003.
The computer program scans the DNA looking for genes, determining their probable function based on other similar genes, and comparing different DNA molecules for evolutionary analysis.
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