Exact(4)
The nominal, single cell model is available in Systems Biology Markup Language (SBML), see Additional File 3. Simulations were performed with Matlab Version 7.1.0.246 (R14) Service Pack 3 (Mathworks) with the built-in variable order, multistep solver ode15s, which is based on numerical differentiation formulas, as the differential equations are stiff.
We consider adaptive meshless discretisation of the Dirichlet problem for Poisson equation based on numerical differentiation stencils obtained with the help of radial basis functions.
We investigated the Basic DIC and a commercial software VIC 2d, both based on displacement field reconstruction with post processing strain determination based on numerical differentiation.
The utilized integrator is based on numerical differentiation formulas [62], and uses strategies for event detection and error- and step size control comparable to ode15s in Matlab [63].
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