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Second, both genes were identified as differentially expressed in embryonic glia based on microarray transcriptome profiling (U.G., unpublished).
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Our combined strategy based on microarray hybridization enabled transcriptome characterization during normal climacteric apple ripening, as well as definition of ethylene-dependent transcriptome changes.
Other transcriptome analyses based on microarray or suppression subtraction hybridization also identified SOX4 as an abundant protein in human MBs [ 33, 34].
Honys and Twell conducted a genome-wide study on pollen transcriptome in Arabidopsis based on microarray analysis.
Although transcriptome profiling studies based on microarray data can detect detailed gene expression in different samples, this approach also has limitations because genes are represented by unspecific probe sets and cannot be reliably detected at low expression levels.
However, these transcriptomic studies of fruit development in citrus have mainly been based on microarray analysis, the next generation sequencing technology provides new opportunities for more accurate and powerful deep transcriptome analysis of fruit development.
The problem of uncovering transcriptional regulation by transcription factors (TFs) based on microarray data is considered.
Based on microarray analysis, differentially expressed genes were identified.
This is particularly true for studies involving class prediction problems, i.e. when the goal is to derive a classification rule for predicting the class membership (typically the disease outcome) of patients based on their microarray transcriptome data.
The SAGE is obviously more labor-intensive than transcriptome analysis based on microarrays.
With regard to A. fumigatus, the results of whole genome transcriptome analyses based on microarrays were highly dependent on the platform used.
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