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For genes sets, we used both "motif-based" regulons, defined based on matches to specific consensus motifs in their 600-base pair upstream regions, and "ChIP-based" regulons, defined based on measurements of promoter occupancy in different conditions by Harbison et al. [7].
Gene names were assigned to sequences based on matches with the highest score.
The estimated spectral false positive rate for both the soluble and cellular proteins were below 1%, based on matches to the reversed database[15].
Within the database, blocks of text can be hyperlinked based on matches to the ontology, including descriptive text (e.g., morphological character descriptions, taxonomic descriptions, and identification tools like taxonomic keys).
As shown in Table 5, only 11 of these proteins had known structures, and ETA made five predictions for them, all based on matches to proteins with less than 30% sequence identity.
Second, additional mitochondrial proteins were identified by searching for genes that had been assigned either definition descriptions containing the word mitochondrial or gene ontology annotations with mitochondria as the subcellular localisation during the automatic annotation of genome sequence (which was based on matches to existing sequence databases).
Similar(20)
There have been several rule-based identity resolution approaches based on matching rules encoded by domain experts.
A change in the law to lift time limits on prosecutions based on matching existing rape evidence with developing DNA databases makes sense.
A 16-man shortlist was drawn up based on match statistics and analysis across a set of criteria, before the public voted.
Source depth estimation is based on Matched-Mode Processing.
The procedure based on matching of asymptotic models is developed.
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CEO of Professional Science Editing for Scientists @ prosciediting.com