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These abundant proteins can be confidently identified based on mass matching with literature [ 20, 27, 39].
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The peptide identities of 13 peaks in the mass spectrum of the HVC homogenate were assigned based on mass matches to the previously identified peptides.
We then assigned the peaks in the spectra based on mass matches to the peptide list generated in the peptidomic study of the whole brain.
Compound identification was based on mass spectra matching in the standard NIST library and retention time of authentic reference standards.
All the peaks were identified based on mass spectral matching (≥ 90%) from both the National Institute of Standards and Technology NISTT) and Wiley libraries.
Identifications were based on mass spectra matching in the standard NIST05 library and retention indices of reference standards in the authors' laboratories.
Peak assignment was based on mass fragmentation patterns matched to the National Institute of Standards and Technology library and to previously reported literature.
The observed corrosion rate tendency based on mass variations, do not match that observed by microstructural and phase composition analysis (FESEM and XRD) of the exposed samples due in some cases to spallation and in others to corrosion products stuck to the samples.
Compound identification was verified based on mass spectral data by computer matching with Wiley 229, NIST 107, NIST 21 and PMW_tox2 libraries.
All peptide matches were filtered based on mass deviation, tryptic state, XCorr, and dCn and confirmed by manual validation.
Scores for automatically matching experimental to virtual spectra were ranked based on mass error, bond dissociation energy, penalties for linkage discrepancies, or violating hydrogen rearrangement rules.
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