Sentence examples for based on marker sequences from inspiring English sources

The resulting contigs were, when possible, ordered and oriented based on marker sequences located therein.

This has two important implications: (i) SNP-trait associations cannot be mapped to a particular region of the genome and (ii) no imputation method based on marker sequences, e.g., hidden Markov models (HMM) or sliding-window algorithms, may be used.

The physical length of a haplotype was estimated based on marker positions on the Nipponbare genome sequence (Gramene 2012).

This indicates that phylogenetic classification of genus Brucella based on marker genes, for instance multi locus sequence typing [ 22], show a surprising similarity to the organism's total gene content.

Based on markers within heterozygous sequences, self-pollinated progeny were classified into three genotypes: homozygous NT409/NT409, homozygous NT411/NT411, and heterozygous NT409/NT411.

Venter, working at NIH, had developed a rapid gene-finding approach based on markers called expressed sequence tags (ests).

Two of these markers (ePt-637610 and ePt-637861; see Additional file 1) mapped to the same map position on each of four linkage groups (LGs 2, 3, 5 and 8) and were found to be redundant markers (i.e. identical sequences) based on their marker sequence similarity (bl2seq: 583/606 base-pair similarity, e-value: 0.0).

Phylogenetic analysis based on the marker sequence separates the E- from the W-type barley cultivars with only a single exception (Fig. 2).

This analysis was based on twice as many markers where sequence similarity to Arabidopsis could be identified, compared with the BnaSNDH map of Parkin et al. [ 7].

Based on these sequences, markers were developed for studying two single nucleotide substitutions and length polymorphism of 62 regions (with variable microsatellite motifs or other indels).

We did not find such an association between resistance QTLs and markers based on random gene sequences and genomic sequences, nor between Prx based markers and QTLs for other agronomical traits than resistance (Table 4).