Sentence examples for based on marker frequencies from inspiring English sources

Graph of the first three principal components based on marker frequencies.

SNP frequencies in the other breed were calculated based on marker genotypes of all selection candidates in that breed.

Measures for LD describe the nonrandom association of genetic markers based on the frequencies of the marker alleles.

Based on 609 marker data, the frequency of deletions of different sizes in the RH panel was almost similar for different chromosomes (Fig.  3).

Markers were also filtered based on allele frequencies, removing SNPs with an estimated MAF lower than 0.02.

For the markers within each group, map calculations were performed in Joinmap based on recombination frequencies, which is the step when linked markers are placed on linkage groups and ordered relative to each other.

Step 2. The allele frequencies of all remaining markers were calculated based on the allele frequencies of the flanking putative QTL markers and recombination rates using the three-locus model assuming no interference from cross-overs (Liu 1997 ) (File S7 ).

While in genetic maps, markers, genes or loci are ordered based on recombination frequencies at meiosis [ 38], physical maps present ordered fragments of cloned genomic DNA fragments and whose sizes and distances are given in base pairs (bp).

Since formula (7) is easily computed based on allele frequencies in a spreadsheet, we recommend its use to design marker sets with an appropriate exclusion power.

AIMs are markers selected based on their frequency differences between populations from different geographic regions.

For AMOVA, computations were based on haplotype frequencies.