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The method we use for protein and mutation grounding was previously described by [ 19] and is summarized below: In the first stage a pool of candidate protein accession numbers is generated based on mappings of gene and protein names occurring in the target documents to accession numbers in MGDB.
The openSputnik database, on the other hand, has extra information available, including the ESTs flagged as low quality and excluded from the analysis in this report, a number of supplementary BLAST fields, and UniGene functional annotations based on mappings of Swissport and InterPro to GO [ 54].
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However, based on mappings to the Unigene database, the number of UniGene clusters represented on each of the four microarray platforms used in the studies of Wei et al., Schramm et al., Ohira et al. and Oberthuer et al. only sums up to 362 UniGene clusters.
Phylofinder is based on mappings that are already out of date, therefore, its shelf life is limited, whereas TCl-Db performs mappings to TreeBASE automatically, and, therefore, will be able to provide a more useful resource in the long term.
Based on mappings done using the Burrows—Wheeler Aligner (BWA) programme, 63% to 67% of the mapped reads were aligned properly paired (Table 1).
The error model is based on mappings (error curves) that assign error rates to specific base positions.
The best currently available chicken transcript catalog is the Ensembl build based on the mappings of a relatively small number of full length cDNAs and ESTs to the genome as well as genome sequence derived in silico gene predictions.
The core of the implementation is based on experimental mappings of discrete wavelet transform (DWT) on the parallel processor architecture.
The 5' ends of pri-miRNAs are annotated based on the mappings of predicted TSS, CpG islands and 5' CAGE tags to the upstream flanking regions.
This approach adapts SLA templates based on SLA mappings of users.
This level was based on municipality mappings of road traffic in or study area.
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