Both insertions and inversions were also clustered based on mapping positions by applying custom made Perl scripts.
Here, we have identified EAL1 as a SHORT-ROOT (SHR) allele based on map position.
Then, the 9,489 super-scaffolds were re-aligned in the order of the eggplant genome based on map position data of the 'marker-tagged' super-scaffolds.
Another technology is optical mapping [ 12– 16], a method based on mapping the position of enzyme restriction sites along the sequence of the genome as observed by fluorescence microscopy, which was automated [ 17, 18] to achieve high-throughput solutions amenable to the analysis of complex genomes.
(C ) Time course of the odor concentration experienced at the head (magenta) and midpoint (black) of the larva during the trajectory shown in panel A. The sensory experiences are reconstructed based on mapping the positions of interest on the dynamic odor gradient computed upon integration of the PDE system for the entire duration of the trajectory.
Taken together, the absence of peaks representing H4S47C-anchored cleavages across the dyad axis but the presence of peaks representing a single H4 at centromeres provides independent confirmation based on mapping of cleavage positions that single H4-containing particles predominate at centromeres.
For some genes, more than one map position was available based on mapping experiments or various blast applications (EST, GSS, EST TUG, maize nucleotide).
The main objective of this study was to analyse competition response patterns in a species-diverse afrotemperate forest in southern Africa, based on mapped tree positions and long-term diameter increment records within the context of a large observational study.
Based on mapping miRNA genomic coordinates to genomic position of all known genes and their exons and introns (based on RefSeq sequences [ 20]), we could classify miRNAs into three classes: intergenic, exonic, and intronic (Table 1).
Chromosomal position information is based on mapping to GRCh37.
