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The model estimated was based on main effects.
Post hoc assessments were carried out based on main effects or interactions as appropriate.
Slight improvements in statistical fit were achieved but as these were very small we opted to present simpler models based on main effects only.
We extended the RR-BLUP based on main effects to model also epistasis for markers with significant main effects in the GWAS.
To investigate the potential pitfall of using space-pruning techniques based on main effects, the first 10 000 most significant interaction pairs obtained from a full exhaustive search and their corresponding main effects P-values are analyzed.
Relative to models based on main effects only, the models that included G×E achieved 9 14% gains in prediction accuracy; adding additive × additive interactions did not increase prediction accuracy consistently across locations.
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Instead, discussions and conclusions were carried out based on main effect and interaction plots.
None of the most significant interactions contains markers based on main effect from single marker analysis or based on prediction using an a priori algorithm.
Within this group of interactions, less than 0.03% would have been detectable based on main effect approach or an a priori algorithm.
A contribution index, which treated forestry profitability as an objective function and was based solely on main effects (Gu 2002), was also calculated: {C}_i=frac{V_i}{Vleft[{SEV}_tright]} (3).
‡Classified based on main lesion.
More suggestions(16)
based on polarization effects
based on artificial effects
based on main components
based on Total effects
based on simultaneous effects
based on main reactions
based on main functions
based on main themes
based on main Types
based on cognitive effects
based on main constructs
based on possible effects
based on main peaks
based on interleaving effects
based on main categories
based on main positions
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