Sentence examples for based on local alignment from inspiring English sources
The resulting labels where manually corrected where necessary, using both the T1 and the T2 weighted scans, to improve the results based on local alignment.
Although this algorithm operates based on local alignment, it produces global alignment results.
There have been many methods based on local alignment of RNA sequences.
edgeR was also not included in further comparisons due to lack of clear definition of uniquely mapped reads for ION-Torrent and 454 datasets which were mapped using tools based on local alignment algorithms.
Although the algorithm used in BLAST comparisons is based on local alignment, the relevance of this results is supported by the fact that more than 50% of the hits obtained for the contigs (16 489 of the 32 592) and over 83% of the hits obtained for the singletons (7770 out of the total 9311) extended over more than 75% of their lengths.
The Visc-2 sequence is, however, highly conserved in human (67% identity) as well as opossum (66% based on local alignment), and its expression pattern is consistent in mouse, opossum, and human embryonic brain development which could reflect the conservation of its transcriptional regulation.
Here, 30 low-level similarity measures (features) are derived that are based on local alignments of DNA-binding domains, flanking regions of DNA-binding domains, the alignment of secondary structure predictions and taxonomic distances.
Second, from the non-coding regions of every group of orthologous genes, we selected several 1 kb long "orthologous" regions based on local alignments and discontiguous sequence similarity (See Methods).
In the rest of this sub-section we evaluate the repeat filtering step, the effect of using the PV in Compart matching, and compare the results of the compartmentization based on local alignments computed with different methods.
