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Although it was not specifically designed to identify population structure based on linked loci, we used STRUCTURE to test our a priori hypothesis of distinct subpopulations based on dhps haplotype and location (30 ).
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Genetic draft is the effect on a locus by selection on linked loci.
(a) Based on linked hospital and RAC records.
Transmit power saving based on link distance.
We calculated the genotypic disequilibrium between loci in each sample based on 10,000 randomizations to check for linked loci.
From these numbers, it is clear that a realistic "base-by-base" model of a full genome is still far beyond the capacity of current computer technology; however, many cases (biallelic SNPs, unlinked loci or blocks of completely linked loci) can already be interpreted based on the very simple one-locus/two-alleles model [ 19].
Moreover, using JoinMap, each grouping of linked loci was based upon a test for independence in a contingency table.
EXPloRA also reported two significantly linked loci on chr.
In a QTL study based on a cross between two lines, the cross generates strong linkage disequilibrium (LD) between linked loci, thus making it very difficult to distinguish linkage from pleiotropy.
Separate GST values were based on marker loci completely linked to the two ecological loci and to the two inversion haplotypes, and on two unlinked markers that segregated independently of all loci under selection.
The hypotheses that a single locus or two linked loci have an effect on resistance to P. medicaginis were evaluated.
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