Sentence examples for based on large concatenated from inspiring English sources
Phylogenomic studies based on large concatenated sets frequently imply monophyly of the typical P-symbionts (Additional file 1).
Recently, two phylogenies of Mollusca have been reconstructed based on large concatenated data sets of hundreds or thousands of nuclear gene fragments [ 24, 25].
Indeed, in general, reliable vertebrate and invertebrate phylogenetic trees are constructed based on larger data sets of concatenated genes because this allows increasing the number of PI sites (e.g. [ 27]).
Similarly, we found that the dN/dS ratios based on pairwise concatenated codon alignments35,36 of the 65 T-cell antigen encoding STB genes conserved across all STB genomes were on average lower than those of the 2,300 genes classified as nonessential and similar or slightly lower than those of the 710 essential genes18 conserved among all STB genomes (Table 1).
Finally, using a phylogenetic study based on 667 concatenated core genes, we demonstrated the position of R. felis within the spotted fever group.
In addition, the distance matrices based on the concatenated housekeeping gene, ospC and ospA sequences obtained with MEGA were transferred into Minitab Statistical Software® (Minitab Inc., State College PA, U.S.A). to generate histograms of the frequency of genetic distances in B. lusitaniae.
Phylogenetic analysis based on 31 concatenated core genes of 58 baculovirus genomes was performed.
Phylogenetic analysis based on 42 concatenated prokaryotic universal genes illustrated a phylogenetic tree (Fig. 2) similar to the one based on the 16S rRNA genes.
We also applied this cutoff when comparing the MCMC trees based on the individual data sets and that based on the concatenated data.
Phylogeny of Cotesia sesamiae individuals and relatives based on (A) concatenated mtDNA of 3 mitochondrial genes (CO1, 16S, NADH) and nDNA of 1 nuclear non-viral gene (LWRH); (B) concatenated nDNA of two viral genes: EP2 and Histone.
