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So, rather than using the reference databanks directly, we first constructed, for each genome, a "knowledge-based" databank comprising one consensus sequence per reference TE sequence, based on its genomic copies (see Methods).
Based on its genomic wide association Tcf7l2 is considered the single most important predictor of diabetes to date.
Based on its genomic locus, three potential translational start sites of Mca1 can give rise to two slightly different long Mca1 proteins or a short version, Mca1451/453 and Mca1432, respectively, although under normal physiological conditions Mca1432 is the predominant form expressed.
We propose a scenario for the origin and evolution of pSMC1, based on its genomic features.
Each transposable element has been assigned a unique ID based on its genomic position.
Based on its genomic organization, we predicted that SPC-P1 phage would resemble CUS-3 with a characteristic short tail.
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Here we present a detailed analysis of the RUNX1 locus based on its complete genomic sequence.
Analyses were performed using ORF5 gene based on its high genomic variability and its widely use for molecular epidemiology studies on North American PRRSV strains or in studies assessing the extent of genetic diversity [ 25, 46, 47].
The comparisons were conducted by repeating the cross-validation experiments on both artificial linkage intervals and random control gene sets for each method, based on its preferred genomic datasets.
The region is designated as a genomic island based on its similarity to a non- Geobacteraceae genome and the predominance of hypothetical genes and DNA-manipulating genes [ 50].
MYB28 was identified as a candidate regulator of aliphatic glucosinolates based on its co-localization within a genomic region controlling variation both in aliphatic glucosinolate content (metabolite QTL) and in transcript level for genes involved in the biosynthesis of aliphatic glucosinolates (expression QTL), as well as its co-expression with genes in aliphatic glucosinolate biosynthesis.
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