Sentence examples for based on haplotype frequencies from inspiring English sources

However, the Khanty and Mansi are significantly different (P<0.05) from each other based on haplotype frequencies (Supplementary Table 2).

The population genetic makeup of N. difficilis varied from sample to sample based on haplotype frequencies of mitochondrial cytochrome oxidase I (mtCOI; P=0.029).

For each genomic region, we computed population differentiation indices, including global and pairwise FST [79] based on haplotype frequencies.

In genes such as classical MHC where haplotype diversity is typically very high, most haplotypes may appear only once in the sample and methods based on haplotype frequencies, such as Gst [82], have little or no power [83], [84].

Likelihoods and algorithms:With the above notation, we construct two likelihoods, one for haplotype frequencies (Θp) based on SNP data (S) and the other for quantitative genetic parameters (Θq) based on haplotype frequencies (Θp), phenotypic (y) and SNP data (S).

For AMOVA, computations were based on haplotype frequencies.

Estimation of genetic structure among sampling sites, based on haplotype frequency and uncorrected genetic distances between haplotypes (Φ ST), was performed using Arlequin 3.5 (Excoffier and Lischer 2010).

To further determine whether population differentiation exists, we estimated FST (only based on haplotype frequency) and ΦST (based on both haplotype frequency and genetic distance) for each population using the mtDNA sequences.

Among the Olkusz populations, the mtDNA diversity increased with the level of pollution, and the OL2 population was the most diverse (Table  1).> -wrap-foot> mtDNA FST based on haplotype frequency - above diagonal; RADseq FST based on SNP allele frequency - below diagonal.

Even though Tajima's D, based on haplotype, frequency spectra were marginally significantly negative, indicating either a population expansion or purifying selection (Tajima 1989), the corresponding value of COI was not, which would be expected in case of an expansion, because demographic events affect all loci.

Estimates of conventional FST values (based only on haplotype frequencies) were very low but significant for only 2 of 36 comparisons (Table 3).