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However, the non-significant difference (P > 0.05) between matrices of genetic distances based on genotypes at supposedly neutral markers on the one hand, and at markers in QTL regions, on the other hand, showed that none of the markers in the QTL regions were influenced by selection.
Based on genotypes at the seven microsatellite loci, we divided the 165 genotyped progeny into three sibling groups: 110 progeny derived from selfing of hermaphroditic parent A (Self), 31 progeny from outcrossing with the other hermaphroditic parent B (Cross_H) and 24 progeny from outcrossing with male parent D (Cross_M).
Recently this concept has been further exploited by the introduction of methods to impute genotypes at untyped markers, based on genotypes at typed markers and information about LD within the region [3], [4], [5], [6], [7], [8], [9], [10], [11], [12].
Similarly, RCMT2 denotes the genetic relatedness matrix based on genotypes at the CMT2 locus.
Table S6: Pairwise FST for C. vestalis parasitoids based on genotypes at 98 SNP loci.
Pairwise F ST for C. vestalis parasitoids based on genotypes at 98 SNP loci.
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Based on genotyping at 10 independent loci, 24 clones were selected based on their genetic diversity (Additional file 1: Table S1).
Handlers' PON1 status was characterized based on genotype at position 192 in the PON1 coding region and level of plasma PON1 activity.
Both the Magnetic Island and the south-west Pelorus Island populations had similar levels of chimerism, i.e., 5% chimerism within each population based on genotypic differences at one allele, and 2% or 5%, respectively, based on genotypes displaying at least two non-shared alleles.
Paternities were assigned based on genotyping individuals at 315 SNPs in the program MasterBayes (Hadfield et al., 2006) and using 14 18 microsatellite loci (Overall et al., 2005).
We estimated social group size by genotyping hair samples collected at 120 main setts across England and Wales and employing a capture-mark-recapture method based on genotypes.
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