Sentence examples for based on genotyped variants from inspiring English sources

Per-allele associations with the number of minor alleles were assessed using multiple logistic regression models, adjusted for study, age (at diagnosis for cases or at recruitment for controls) and nine principal components (PCs) derived based on genotyped variants to account for European population substructure.

If an SNP was genotyped, we always reported the result based on genotyped data.

Rate of high-risk type calculated based on genotyped strains.

Two types of PVE estimates for DMA% are presented in Table 2, those based on genotyped SNPs only, and those based on genotyped and imputed SNP.

The regional heritability results based on genotyped data are the same as those based on imputed data (data not shown).

The method of Gengler et al. [ 14, 15] uses the additive genetic relationship matrix in a mixed model setting to predict the gene contents of those animals not genotyped based on genotyped relatives.

When an animal is not genotyped and has no phenotypes and no progeny, the GEBV is driven by PA and, in most cases, only a slight improvement in prediction is achieved based on genotyped relatives [ 17, 18, 26].

For comparison, the prediction using the pedigree based relationship matrix (ped method) and the genomic prediction using (10) based on genotyped animals (two-step) are also shown.

Their observations are in agreement with the distribution ranges based on genotyped individuals showing largely overlapping distribution areas of many species.

The variant frequency sliders (Fig. 1C) visualize the distribution of variants based on variant frequency values.

2) GBLUP - Reduced animal model using marker-based relationships for genotyped birds, with covariance matrix derived by the method of VanRaden [ 11], using allele frequencies based on all genotyped animals.