Sentence examples for based on genotype likelihoods from inspiring English sources
We inferred individual ancestry based on genotype likelihoods from realigned reads by assuming a known number of admixing populations ranging from 2 to 16, using the software NgsAdmix25.
It provides maximum likelihood estimates that are based on genotype likelihoods instead of genotypes and thereby takes the inherent uncertainty of the genotypes into account.
Based on genotype likelihood values, we estimated the posterior probability of the minor allele frequency (p i, i = 1,2,…, 2 k) in the sample of 2 k chromosomes, where k is the sample size of breeds [ 8].
Unlike Linneaus, Darwin or Haeckel, we organize geneologies based on genotype, not phenotype.
We then filtered these based on the genotype likelihood ratio (the difference between the log likelihoods for the most likely and the second most likely genotypes), requiring this to be below −5 in all three individuals.
The results were processed by a maximum likelihood program that determines full- and half-sibling groups based on genotypes [25].
We estimated social group size by genotyping hair samples collected at 120 main setts across England and Wales and employing a capture-mark-recapture method based on genotypes.
Animals were used based on genotypes.
Paternity analysis was performed by a likelihood-based approach based on multilocus genotypes for all adult genets and offspring using CERVUS version 2.0 [ 41].
Assignment rates that were based on maximum likelihood with quantitative genotypes were similar to those based on maximum likelihood with perturbed genotypes but, for more than 50% of cases, the two methods resulted in individuals being assigned to different families.
Kingroup's allocation of pairs to "sister" or "cousin" categories is based on the likelihood that the genotypes of the two individuals would occur if they were full sisters, versus the likelihood that they would occur if the individuals were maternal cousins, given the population allele frequencies [29].
