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As with C. teleta, BLAST searches of the H. robusta trace files on NCBI and Genscan predictions based on genomic sequence of the assembled genome on the JGI website resulted in the identification of two putative Dlx genes.
BLAST searches of the C. teleta trace files on NCBI and Genscan predictions based on genomic sequence of both the assembled genome on the JGI website and of a genomic contig generated manually from trace files resulted in the identification of two putative Dlx genes.
For the human chimpanzee fusion experiment, primers were selected by identifying non-polymorphic primer sequences flanking intron-spanning amplicons that contain at least one single-nucleotide substitution between the two species based on genomic sequence alignment.
An analysis based on genomic sequence can reveal the relationships among strains more accurately, so additional genome analysis is required to resolve the observed discrepancies.
Ramos, M.L. et al. Chromosomal and phylogenetic context for conglutin genes in Arachis based on genomic sequence.
This class of SSRs is more transferable between species than those based on genomic sequence, and so can provide anchor markers in cross-species comparative mapping.
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The absence of a universal signature gene has hampered classification of viral genomes based on genomic sequences Recent studies of bacteriophages have identified conserved patterns of oligonucleotides used as genome signatures unique to each genome analyzed that appear to be co-evolving with their hosts [ 25].
These cross-species analyses were based on genomic sequence-based orthologous relationships, downloaded from Ensembl Compara (http://www.ensembl.org).org
Therefore, it is anticipated that the gene catalog presented here will be a better representation of the PST gene complement, than the previous one which was based on genomic sequences alone [ 14].
Primers (Table S1) were designed based on genomic sequences (X03935) of non-glutinous maize using Primer3 [29].
We have tested predictions based on genomic sequences using publicly available EST and exon array data.
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based on genomic survey
based on genomic screening
based on genomic reference
based on genomic diversity
based on genomic expression
based on genomic understanding
based on genomic position
based on genomic analysis
based on human sequence
based on genomic content
based on genomic organization
based on genomic constitution
based on genomic information
based on genomic prediction
based on genomic selection
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