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Maximum, average, and median gaps were calculated for each analysis based on genomic position of SNP on the bovine UMD3.1 genome assembly.
Based on genomic position, a total of 107,896 SNP were shared between the 2 platforms; however, based on genotype concordance, only 96,031 SNP had complete concordance at these loci.
Certain structured RNAs are known to form clusters based on genomic position.
Identified SNP were compared with those in the ENSEMBL bovine SNP database based on genomic position and allelic variants.
Most genes defined as homoeologs based on genomic position fulfilled expectation by clustering together in the phylogeny.
After sorting reads based on genomic position using the samtools software package [ 13], breakpoints were determined using a statistical approach implemented in the R programming language.
Similar(53)
Based on genomic positions and orientation, putative target genes were identified.
If tables per_position_value and per_partition_value stored values based on genomic positions or ranges, it would also depend on which reference sequence build (e.g. NCBI36, GRCh37) was in use for that analysis.
Nucleotide positions were numbered based on genomic sequences of SMAD3 [GenBank: NC_000015.8] and SMAD4 [GenBank: NC_000018.8].
Hu, G. & Agarwal, P. Human disease drug network based on genomic expression profiles.
Notta, F. et al. A renewed model of pancreatic cancer evolution based on genomic rearrangement patterns.
More suggestions(17)
based on genomic location
based on genomic survey
based on genomic correlation
based on genomic alteration
based on genomic testing
based on genomic information
based on genomic expression
based on genomic understanding
based on genomic variation
based on genomic instability
based on genomic sequence
based on physical position
based on centromere position
based on stratigraphic position
based on nuclear position
based on social position
based on nt position
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