Sentence examples for based on genomic coordinates from inspiring English sources

Based on genomic coordinates 72 HOX genes were grouped into tentative gene clusters if the genes were less than 20 kbp apart.

Additional mappings were derived for 99 human lncRNAs from lncRNAdb and from literature through manual curation and overlapped with each other based on genomic coordinates.

The overlap of each Alt Event with Gene Array probes and Exon Array probe sets was computed based on genomic coordinates.

Aligned reads were analyzed to determine if they mapped to unique or repetitive genomic regions, based on mapping qualities, or within protein-coding genes, based on genomic coordinates, using MATLAB (The MathWorks, Inc., Natick, MA).

Redundant gene models were identified and merged based on genomic coordinate, resulting in 5,571 standalone annotated lincRNA genes (see also Additional File 1 for details).

Using the Known Alt Events (Alt Events) annotation track from the UCSC Genome Browser (Human March 2006 hg18 assembly) [ 25], we surveyed the number of documented alternative splicing events that shared overlap based on genomic chromosomal coordinates with Gene Array probes and Exon Array probe sets.

For PCR primer design, the original (not bisulfite converted) DNA sequences flanking the predicted Alu insertion sites were extracted from the UCSC reference human genome, based on their genomic coordinates [ 48].

Genomic coordinates were classified as genic or non-genic based on the genomic coordinates of SGD genes for the 2003 Assembly (sacCer1).

Collecting genomic observations improves one's understanding of the genome, which in turn improves the ability to deliver value through the application that is based on genomic information, which then enables further data collection.

Based on genomic analyses, Nab.

Based on the genomic coordinates, we defined small RNA clusters on the genome, where sequences overlapping on the same strand with at least one base pair are merged.