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Assembled contigs were assigned a predicted gene identity based on genome location as described in the Methods.
The ESTs that aligned to the genome were assembled into 6,101 contigs based on genome location.
Current work is underway to analyze Solexa sequences for additional characteristics based on genome location (e.g., 5′ UTRs, etc)., sequence, and structural similarities.
Based on genome location and levels of selection pressure, we suggest that the "unknown" genes in this dataset represent the best candidates for the unaccounted components of the Listeria flagellar machinery.
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The valid EST alignments and cluster alignments were then grouped based on genome mapping location and assembled into gene structures that include the maximum number of compatible transcript alignments.
Lee et. al suggested network motifs based on genome-wide location data.
Transcriptional regulation is known to be highly connected through the networks of cooperative transcription factors (TFs) based on genome-wide location analysis in yeast [ 1, 2].
However, the location of the observed oriC region in both genomes is slightly different from the predicted location based on genome asymmetry, a feature that has previously been seen in the Helicobacter pylori 26695 genome [ 16, 17].
A new molecular marker technology, based on genome sequence and physical map locations, is reported for those species whose assembled genome sequences are available.
The 1000 Genomes Project is based on genome sequencing reads from 1092 individuals from locations worldwide [ 41].
Transcriptome Partitioning A straightforward way to partition transcripts is based on their genome locations from an annotation database.
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