Sentence examples for based on genome annotations from inspiring English sources
Kroth et al. 2008 developed an annotated model for a biochemical CCM based on genome annotations of the marine diatoms, P. tricornutum and Thalassiosira pseudonana.
Comparative analyses with other bacterial genomes were performed based on genome annotations deposited in the NCBI Genome database.
Based on genome annotations and pathway mapping, we had expected H. utahensis to grow on multiple substrates, using a variety of enzymes to metabolize different carbon sources.
Based on genome annotations of all Shewanella, Glu was predicted to be an essential precursor for biosynthesis of heme, nucleobase (purine, pyrimidine), Pro, peptiglycan, aminosugar, and fatty acids in Shewanella.
Genomic studies including gene expression by microarray and chromatin feature assays by tiling array are based on genome annotations.
The Pathways Tools software [ 28] was used to reconstruct metabolic pathways and operons based on genome annotations.
By grouping SNPs based on genome annotation and fitting multiple random effects, we show that the prediction accuracy could be further improved.
To understand its metabolic performance, a genome-scale metabolic model, iZX637, consisting of 637 genes, 1347 reactions and 1133 metabolites, was reconstructed based on genome annotation and literature mining studies.
The metabolic pathways were predicted based on genome annotation, with missing enzymes within the predicted pathways replaced by candidate proteins when possible.
