Sentence examples for based on gene sets from inspiring English sources

These differ from the HCC modules, as they are constructed based on gene sets derived by hierarchical clustering.

Additionally, GSEA for the on-target signatures was conducted using Fisher's exact test based on gene sets defined by KEGG pathways as annotated by the Bioconductor package KEGG.db version 2.2.0.

It is expectable that, where conventional methods for finding signatures from gene expression data are failing in capturing part of the functional information of the modules, methods based on gene sets [34], [35] and specifically those that consider the structure of the network [36], [37] will produce sounder results.

Enrichment analysis was based on gene sets including EHMN, KEGG, NCI and GO from GSEA.

All bioinformatic functional analysis was based on gene sets from GO [ 36], KEGG [ 37] and mSigDB [ 38].

To our knowledge Caipirini is the only service that can search literature directly based on gene sets.

Noteworthy that most of these approaches were based on gene set enrichment (GSEA) statistical techniques [13].

These data were imported into javaGSEA desktop application v 2.0 [17], [17] where they were analyzed using 1000 permutations based on gene set, and signal2noise for ranking.

S and Pr could be defined for stimuli based on gene set or protein phosphorylation activation.

Functional annotations of the cancer network motifs are based on gene set enrichment analysis by implementing DAVID.

A prediction algorithm based on gene set enrichment analysis (GSEA) [ 14] was also developed to rank compounds based on input signature genes obtained from tumor comparison.