Sentence examples for based on gene position from inspiring English sources

The physical distribution of AP2/ERF genes on chromosomes was drawn by perl scripts based on gene position in the genome.

The physical distribution of AP2/ERF genes on chromosomes was drawn by MapChart based on gene position in the genome [ 43].

For the analysis of duplications, the maps of the PTP genes on the virus segments are represented based on gene positions indicated in Genbank.

Seven different partition schemes based on gene and codon position were tested, from one that separates all genes and codon positions, totaling 16 partitions, to non-partitioning of the data (analyzing it as one single partition).

The authors of the T. pyriformis mtDNA study suggested a possible homology of Paramecium ymf84 and T. pyriformis ymf74 based on gene size and position (between nad10 and rpl2) [ 1].

One recent approach that addresses this problem is the unsupervised clustering of genomes based on gene order and genome position, which helps to reveal species relationships that may not be apparent from traditional phylogenetic methods.

Based on gene order alone, the most parsimonious position for Xenoturbella is as a basal hemichordate (hypothesis X6, table 1).

By aligning the expression patterns with an evolutionary tree based on gene sequence similarity (Fig. 2B) or with position along the locus (see Additional file 1), it was clear that there were no obvious patterns.

Inspecting species relationships based on gene distribution utilizes information about gene co-occurrence, gene order, gene-to-gene distances and absolute gene positions in the genome.

These groups of sites are often user-defined (in which case we call them 'data blocks' here), for example based on genes and codon positions [ 7].

We extracted from this database all the proteins encoded by genes in scaffold 6540 (chromosome 2) and reordered them based on their gene position on this chromosome.