Sentence examples for based on gene orientation from inspiring English sources

Thus, these three convergent gene pairs of R. prowazekii do not terminate transcripts at specific sites within the intervening region, as might be expected based on gene orientation.

Introns were sequentially enumerated based on gene orientation.

Furthermore, the genes were aligned based on gene orientation and to the species with the highest number of genes similar to DNA sequence alignments with indels.

The three genomes each encompass 55 ORFs (Additional file 1: Table S1), apparently organised into three transcriptional modules (as based on gene orientation), a gene arrangement that is typical for 936-type phages [ 26, 28].

Paralogues within each cluster are designated 13 to 1 based on gene 5′-3′ transcribing orientation although there are only 11 paralogues at most found so far in vertebrates.

To support the putative orthology of GmMYBs and AtMYBs, we examined the syntenic relationship based on gene content, order, and orientation between the genomes of soybean and Arabidopsis.

We developed a putative operon extension tool which is only based on the gene orientation, so that genes that are downstream of the selected gene (or genes) and with the same orientation are added to the putative operon until a gene with the reverse orientation is found.

^The predicted binding site is a potential promoter for a neighboring gene based on its orientation and location within 250 bp of the 5' end of a neighboring gene or a long intergenic region (>100 bp) that may encode a sRNA.

IGRs can be classified into three classes based on the orientation of the genes that flank them: 5'-5', 3'-3' or 5'-3', when surrounded respectively by two start codons, two termination codons or a start and a stop codon of successive genes.

The cartoons reoriented based on the orientation of the MCP gene.

We did not separate intergenic sequences based on the orientation of their flanking genes (which could be either the same or opposite) because we did not observe any substantial effect for this factor on their relationship with gene expression (not shown).