Sentence examples for based on gene composition from inspiring English sources

The region containing EXT repeats at chromosome extremities can be differentiated based on gene composition, GC content, recombination sites density and chromosome landscape.

Phylogenetic analysis of COG1518 combined with gene neighborhood comparisons yields a clear classification of CASS based on gene composition and (predicted) operon organization (Fig. 2a) which is, generally, in agreement with the recent study of Haft et al [ 24].

Comparison with other eukaryotic genomes suggests that terminal regions could be distinguished precisely based on gene content, genetic instability and base composition biais.

Based on the gene composition, they seem to represent different cell types.

The genomes of C. subterraneus and the genomes from related species of interest were utilized for HGT detection throughout the GOHTAM platform [ 71], which detects horizontal gene transfers based on tetranucleotide composition and/or codon usage.

Taxonomy-independent methods, however, extract features from contigs to infer bins based on sequence composition, abundance, marker genes, time series abundance profiles or any combination of them (Wu et al., 2014; Kang et al., 2015; Lin and Liao, 2016).

The two classes of genes (based on their base composition) found in grasses were proposed to have distinct gene functions (Shi et al. 2007) and gene regulation patterns (Tatarinova et al. 2010) which will affect the selective pressures acting on them.

In our analysis of TE evolution, we calculated the TE of an entire gene based on its codon composition (dos Reis et al. 2004).

On testing, PathoProT predicted all the known virulence genes based on the pathogenomic composition of the genomes by clustering predicted virulence genes across different selected strains.

Various methods have been developed to detect horizontal gene transfer in bacteria, based on anomalous nucleotide composition, assuming that compositional features undergo amelioration in the host genome.

Basically, there are two main methods to identify putative horizontal gene transfer events, phylogenetic methods and surrogate methods based on nucleotide composition.