Sentence examples for based on gene IDs from inspiring English sources

Based on gene IDs, we obtained the sequences of miRNA targets from NCBI.

AtPAN allows user queries based on gene ID, locus, keywords and sequence.

PASTAA retrieves promoter sequence based on gene ID, TRAP works with given sequence dataset.

As most of the studies only report their data based on gene symbol or protein ID, for ID mapping, we used bioDBnet (24) to make data be searchable using different IDs in gene and protein levels.

miRNA target genes derived from TargetScanS, PicTar, and RNA22 were then mapped to the ~16920 unique genes based on their gene IDs.

Since the size of the gold standard is rather modest (116 PGSC genes ids), we used an additional validation scheme based on gene expression data.

Based on gene sequence similarity, the putative functions of the two genes, which were designated as tyrB (NCBI Gene ID: 1043062) and tyrB-2 (NCBI Gene ID: 1045962), were predicted to encode ArAT proteins.

Based on the gene IDs of these gene sets gDist was calculated for all pair wise combinations of up- and downregulated gene sets separately.

Genes were matched across data sets based on Entrez Gene IDs.

The regulated genes were mapped to available KEGG pathways based on the gene IDs.

Comparison of results with the Affymetrix based dataset, based on genes with common Unigene ids on both platforms, show a similar pattern of differentially expressed genes.