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Binning based on expression in only one sex can cause expression in that sex to appear relatively reduced among weakly expressed genes, but relatively high for strongly expressed genes, even if the distribution of gene expression is identical for both sexes.
We measured gene expression in whole blood, where TF, TFRC, TRF2, SLC40A1, and SLC11A2 genes are not highly expressed (Uhlen et al. 2010; Wu et al. 2009); therefore, the gene expression analyses should be repeated based on expression in tissues where these genes are more highly expressed.
In addition to these selected sRNAs, grouping of all differentially expressed sRNAs by hierarchical clustering reveals two overall clusters based on expression in fermentation conditions and six overall clusters based on expression in chemical stress conditions (Additional file 5).
For the 44 microRNAs predicted based on expression in ESC, 41 were present in at least 3 of the 4 ESC cell lines and only 1 was detected in only a single line.
In case of HIV, we filtered proteins based on expression in macrophages.
Traditionally, p1 alleles are phenotypically categorized and named based on expression in these tissues.
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Identification of key microRNAs and cellular target genes involved in HPV-related pathways based on expression patterns in HPV-infected cervical tissues provides useful information about prognosis.
The final step of the NLP operations in the interpreter includes a queries' template based on expression matching in order to extract relationship patterns between clinical entities.
Alleles were selected based on expression levels in silico, possible ER/Golgi localization and the availability of T-DNA lines.
For the tree based on protein expression, we calculated the mean expression value for each gene based on expression levels in two experimental replicates (Table S2).
For the tree based on mRNA expression, we created pooled samples by calculating the mean expression value for each gene based on expression levels in two individuals of the same species (Table S2).
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