Sentence examples for based on expressed transcripts from inspiring English sources

In addition, since the sequences presented here are based on expressed transcripts, any genetic markers developed from these sequences are, by nature of the study, gene-based and ultimately more valuable for future molecular-based cultivar development strategies.

Then based on expressed sequence tag (EST) analysis, hundreds of scrambled exons were discovered, however, it failed to distinguish circRNAs from trans-splicing transcripts and exon repetition (Dixon, 2005; Shao et al., 2006).

Here we report a transcript sequencing approach based on Expressed Sequence Tag (EST) analysis of Hpa-infected Arabidopsis leaves.

Additional file 3: A) Heatmap of hierarchically clustered expression levels (median centered FPKM +1) of significantly differentially expressed transcripts based on the TMM-normalized dataset.

Thus, at T3, there were more differences in expression between environments than between origins based on absolute number of differentially expressed transcripts.

Like others have demonstrated the overall agreement between platforms improves when only highly expressed transcripts (based on their tag counts) are included (Table 1).

We next binned the transcripts into groups of highly, moderately and lowly expressed transcripts (based on the microarray data), with an approximately equal number of transcripts in each bin.

In this study we suggest a simple screening approach based on hierarchical clustering to identify bimodally expressed transcripts from microarray expression data that can be used alongside more complex approaches.

Based on this knowledge, we identified differentially expressed transcripts related to ethylene biosynthesis enzymes (Fig.  2).

Based on MDP genes annotations, the differentially expressed transcripts were classified into functional categories (Additional file 2).

Here, we discuss a simple method based on hierarchical clustering to identify bimodally expressed transcripts, which may be used with either microarray or RNAseq data.