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Based on evolutionary analysis of MADS-box genes in plants, two groups [55], [56] concluded that type I MADS genes evolve much faster than type II MADS genes.
We have used an approach based on evolutionary analysis to identify statistically distinct subfamilies of CDK and CDPK in the Apicomplexa and Chromalveolata, and explore the structural adaptations of CLK for substrate binding among chromalveolates.
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While no formal guidelines have been established for what constitutes a significant sequence similarity between an introduced protein and familiar proteins normally present in foods, one general recommendation based on evolutionary sequence analysis is that proteins sharing <20% identity over 100 or more amino acids should not be considered homologs (Doolittle, 1990).
Furthermore, R272W was introduced to K47D/V132F based on evolutionary trace analysis.
Here, we present a structural model of YidC based on evolutionary co-variation analysis, lipid-versus-protein-exposure and molecular dynamics simulations.
Analysis based on evolutionary game theory and systems biology also points out the importance of Warburg effect in tumorigenesis (Basanta et al. 2008; Vazquez et al. 2010).
For example, although Glimmer3.0 (Delcher et al., 2007) is often considered to have lower specificity than other predictors (e.g. GeneMark HMM or Prodigal), many genes predicted by Glimmer3.0 and not included in genome annotations have been confirmed in a recent analysis, based on evolutionary conservation and functional characterization (Wood et al., 2012).
FBA provides information based on metabolite flow, while phylogenetic analysis captures essentiality based on evolutionary conservation.
The method used was based on evolutionary mapping of the plant cover, application of landscape indices and spatial analysis of livestock pressure.
The second is based on Evolutionary Algorithm.
Evolutionary epistemology was 'evolutionary' in the sense that it was based on evolutionary theory as a biological theory.
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