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Figure 3C shows profiles based on ENCODE X-ChIP-seq data as processed by the ENCODE uniform processing pipelines and downloaded as 'raw signal', our high-resolution X-ChIP-seq stacked read data, and raw ChIP-exo data around a representative CTCF motif.
Primers were designed to DNase hypersensitivity peaks in K562 cells based on ENCODE data.
The p53 RE sequence does not fall within DNAse sensitive sites based on ENCODE data.
The human genome sequence (hg17) regions studied were obtained using the UCSC Genome Browser [ 54] based on ENCODE coordinates [ 25].
For mouse, we used a database of region sets that we previously compiled based on ENCODE, Cistrome, and other public databases (Bock et al., 2012).
In fact that paper provided p53 bound regions classified as enhancers based on ENCODE annotation or as proto-enhancers, where p53 could act as pioneer transcription factor.
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Logging efficiency and capacity were improved greatly by log record mode based on encoding storage.
Additionally, we use a UEP scheme based on encoding degree information by the frame type.
The method is based on encoding of the rows of FSM structure table and replacement of logical conditions.
In water/DMF (3:1, v/v) XOR and XNOR logic gates are presented using pH and Fe3+ as chemical inputs based on encoding binary digits of logical conventions.
It shows a distributing method of predefined frequency resource block based on encoding segmentation in order to support eliminating inter-cell interference of various wide-band services.
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