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Then, we show that including multiple structures of a protein of interest may be used to improve the reliability of our method and makes it more reliable than other automatic methods based on either protein sequence or protein structure.
In particular of the biotechnological applications, metagenome libraries could be screened based on either protein function or nucleotide sequences.
If an unequivocal, definitive diagnosis is required, characterization methods based on either protein or DNA analysis must be used.
The positions of Brotula and Morone remain somewhat unresolved, receiving low bootstrap support and conflicting resolution based on either protein or RY-coded nucleotide data.
The annotation by Ensembl automatic pipeline using GeneWise model based on either protein or aligned EST's resulted in a coding sequence within a single exon that lacked both start and stop codons, however, aligned well with AS-C bHLH domains.
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Some features use both proteins in the pair, while some others are based on either the host protein or the pathogen protein.
Various computational methods have been developed to infer the protein functions based on either the sequences or domains of proteins.
Modifying the genomes of many organisms is becoming as easy as manipulating DNA in test tubes, which is made possible by two recently developed techniques based on either the customizable DNA binding protein, TALEN, or the CRISPR/Cas9 system.
We then built a neighbor-joining tree for each MSA based on either the CDS or the protein sequences (in function of the divergence level), using the MEGA4 software (Tamura et al. 2007) and applying either the Tamura Nei (Tamura and Nei 1993) or the Jones, Taylor, and Thorton (Jones et al. 1992) evolution models.
In analyses based on either the catalytic region or whole protein, the eight MLK-like proteins of P. infestans only cluster loosely with human MLKs.
A number of molecular modeling approaches have been developed based on either the three dimensional structure of proteins (e.g., homology modeling, molecular docking and molecular dynamics simulations) or the ligand (e.g., 3D-QSAR and pharmacophore modeling).
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