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PolyPhen-2 predicts variants as 'benign', 'possibly damaging', or 'probably damaging' based on eight sequence-based and three structure-based predictive features [ 35].
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Annotation of the C. sinensis transcriptome sequences was based on two levels of sequence similarity, namely sequence-based and domain-based alignments.
In our study, we have developed models based on two feature encoding methods; i) sequence-based and ii) contact-based methods.
Based on the proposed sequence-based scheduling strategy, we propose a scheduling algorithm.
This would need further evaluation as the results were based on two Internet-based trials.
Identification of polymorphic sites was based on two alleles sequenced.
Among the 77 isolates, 74 (96 %) isolates were designated as M. intracellulare based on multigene sequence-based analysis.
These cross-species analyses were based on genomic sequence-based orthologous relationships, downloaded from Ensembl Compara (http://www.ensembl.org).org
Traditionally, many computational prediction tools that have been reported in the literature are purely based on sequence-based descriptors.
Based on sequence-based analysis, ZS1 isolate appeared to fall into the group of P. aeruginosa (Fig. 2a).
Unlike other tools based on sequence-based approaches, eThread is template-based.
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CEO of Professional Science Editing for Scientists @ prosciediting.com