Sentence examples similar to based on direct alignment from inspiring English sources

To overcome this limitation, comparative genome sequence analyses based on direct genome alignments have been performed with the aim of reconstructing precise ancestral gene orders [ 9, 14- 16].

Finally, the tools based on Direct fragmentation do not directly exploit paired-end information; they fragment every read before the first alignment and find fusion candidates aligning those fragments to a genomic reference.

The topology of the maximum likelihood tree based on a direct nucleotide alignment (edited with ALISCORE; including 12,648 positions; Additional file 5) does not differ from that based on the nucleotide alignment derived from the amino acid alignment in any strongly supported nodes.

The nucleotide alignment was generated based on the protein alignment using codon alignment.

Nanofibrous scaffolds are of particular use as they are porous, allowing transport of nutrients and waste products, have high surface area to volume ratios, and can provide directed cell growth based on fiber alignment.

This alignment was then fitted to a second alignment based on a needle alignment of E. coli Slt70 and the RvhB1 protein from Brucella suis [116].

The alignment size and RMSD based on this virtual alignment are termed the "virtual alignment size" and "virtual RMSD (vRMSD)", respectively.

To this end, we first define the local kernel alignment based on centralized kernel alignment.

This alignment is based on the Multiz alignment algorithm [ 17].

We're providing a similar kind of service that's not based on algorithms, but is based on the alignment of the planets and the stars". .

Direct orthologues of some of these divergent SoxBs were found in the genome of the hydrozoan cnidarian Hydra magnipapillata in our analysis (Fig. S5, based on the alignment in Fig. S2D).