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Increasing evidence from DNA sequence data has revealed that phylogenies based on different genes may drastically differ from each other.
Published gene signatures that are predictive of clinical outcome in breast cancer are partly or completely based on different genes.
Conflicts between separate phylogenies based on different genes can be observed on several genomic levels: when comparing phylogenies based on different genomes (e.g. organellar vs. nuclear), different genes or different copies of a gene (either alleles or paralogues), or even different parts of one gene.
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Finally, the PCR methods used in the laboratory in Niger (CERMES) and that in Oslo (NIPH) were based on different gene targets.
Genes in the vitamin E pathway contained between two, three, or four nonsynonymous SNPs based on different gene models, and all gene models were analyzed for allele frequency calculations.
The ML trees show the least number of inconsistencies when compared to traditional morphological and other molecular studies based on different gene loci, and taxonomic classifications and expected relationships between species.
Based on different gene expression levels, we obtained besides the HER2 positive.
Sepsis subtypes can be identified based on different gene expression patterns.
Based on different gene expression profiles, breast cancer is classified into at least four subtypes [ 1].
By doing so, we can also confirm whether the results based on different gene expression data are consistent.
The deeper branching and distinctness of Bradyrhizobiaceae and Methylobacteriaceae from other Rhizobiales is also strongly supported by phylogenetic analyses based on different gene sequences and conserved indels in many proteins [ 1, 17, 45].
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CEO of Professional Science Editing for Scientists @ prosciediting.com