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Mapping and annotation was performed based on default parameters in the BLATS2GO application.
Read quality control was part of the Celera pipeline and was based on default parameters.
The latter analysis was based on default parameters and 999 permutations using month as the temporal unit of interest.
The first alignment was based on default parameters, additional alignments were constructed by using different parameter settings in relation to gap penalty.
To better understand phylogenetic relationships between intraspecific data, which normally consist in very similar sequences, we connected haplotypes on a median-joining network [ 43] using NETWORK 4.5.0.0 program based on default parameters.
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Starting operators were based on default settings and auto-optimized during searches of parameter space using Markov Chain Monte Carlo (MCMC) sampling procedures.
Create a new document based on default template.
The value of 85 was based on the default parameters of the oPOSSUM software, for which 85 was chosen to best discriminate known TFBS from background.
According to Table 1, MEGAN4 (contigs) does not have more "Higher" annotation as expected because the BLASTN alignment algorithm based on the default parameters might only depend on the matching of some short patterns in the contigs and this might result in the wrong annotation.
Here, the number of each type of descriptors is based on the default parameter value.
Illumina ProbeIDs were used as input against the background of the Homo Sapiens species; analyses were executed based on DAVID default parameter settings (19th of April 2010).
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based on mapping parameters
based on default values
based on default assumptions
based on user parameters
based on binding parameters
based on configuration parameters
based on design parameters
based on model parameters
based on flow parameters
based on performance parameters
based on input parameters
based on predefined parameters
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