structuring and analysis of knowledge based on database reverse engineering techniques and data mining can be integrated into environments like the Web-sites.
Because the GOrilla enrichment relies on incomplete annotation of functional processes and can overlook functional connections even in well-annotated genes, we used the top enrichment as a focus for further manual curation, based on mining the PubMed literature database.
The first method is based on published report mining.
Based on data mining of published microarray databases in Oncomine database, we have shown that Id4 is highly expressed in the normal, normal adjacent, and benign prostates and its expression is significantly decreased in prostate cancer (metastatic prostate cancer
Through a different approach, based on mining protein protein interaction databases, we found that a high fraction of PTPN11 and SHOC2 target genes encode proteins interacting with the E3 ubiquitin ligase, CBL.
The purpose of this paper is to develop a customer-oriented organisational diagnostic model, 'PARA' model, based on data mining of customer-complaint databases.
Firstly, for the 3D visualization application of the digital mine, the ground and underground integrative visualization framework model was proposed based on the mine entity database.
The use of ANDSystem, Pathway Studio and STRING computer tools based on text-mining and database-mining approaches allowed us to reconstruct associative networks, representing molecular genetic interactions between genes, associated concurrently with comorbid disease pairs, including pre-eclampsia, diabetes mellitus, gestational diabetes and obesity.
Conditional probabilities regarding the probability of A according to the presence or the absence of M, P(A|M) and P(A∣∣¯¯¯¯M) can be estimated using methods of data mining based on growing databases.
