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For the MDS analysis, we constructed the distance matrix based on correlation scores among the samples.
Global and local efficiency indices were thresholded at p-FDR < 0.05 in a two-sided analysis based on correlation scores, for each subject and each condition with the Conn toolbox.
For tuber profiling, each sample was assayed twice in a two-colour dye experiment, allowing cross-validation of the observed variation and subsequent filtering based on correlation scores (Methods).
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In this section, we propose a heuristic strategy based on correlation score, which is then compared against selecting the feeding order randomly and shown to be more 'optimal' by offering certain advantages.
In Section 2.2, we provide a heuristic sample ordering selection algorithm based on correlation score to cope with the order selection problem that arises when using mutant fitness data.
We also tested two criteria of variable selection based on correlation coefficients and cross-validation scores and found that these statistical indices reached a plateau when the true set of covariates was included in the POPS model.
Of the nearly 50 fingerprint options provided, we selected a subset of 10 to retain, based on correlation analysis of associated similarity scores with the KNIME Correlation Filtering metanode.
Disease clustering was done in R (http://www.r-project.org) using the pvclust R package with "complete" setting for hierarchical clustering, based on correlation distance of R-scaled scores between genes and diseases, with 100 bootstrap replications.
An alternative edge scoring based on correlation of gene expression has been proposed by Guo et al. (2007).
Hanushek's calculations are based on correlations between test scores and future earning, not evidence of improved learning, which would be fine if he listened to the education experts about interpreting his numbers.
The curves are based on EPSA correlation scores for each of the five oncogenic mutations performed by Bild et al. (see Methods).
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