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Networks were then algorithmically generated and graphically represented based on connectivity of genes.
To identify densely correlated gene groups, several algorithms have been developed based on connectivity of the network.
Networks were generated based on connectivity of each of the genes, and a score (p-value calculation) was assigned based on likelihood that these genes are part of a network and did not associate due to random chance.
These methods use a pre-defined gene list of interest (seed genes) as seeds for iterative network building based on connectivity of non-seed genes with the seed genes.
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In the first option, which is accessed by the "Generate and analyze subnetworks based on connectivity", the inclusion of nodes and interactions is based on nodes' degree.
We segmented the thalamus based on connectivity without the need of predefined regions of interest that may bias results.
However, they are without doubt visual organs based on connectivity and the expression of photoreceptor specific proteins such as opsins (Malpel et al. 2002).
The computations based on connectivity metrics are explained for each of these three approaches.
Network assembling was based on the connectivity of the differential expressed genes under the assumption the higher the connectivity of a gene the more significant it is.
Thus, based on the connectivity of DLPFC with these areas of prefrontal cortex, DLPFC input to orbital and ventrolateral prefrontal cortex does not seem to be required for the involvement of these cortical areas in new scene learning.
The distribution of functional assignment of neighbors of an unclassified protein also varied based on the connectivity of the protein.
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