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Nevertheless, this phylogeny based on complete protein sequences does provide two useful insights.
Phylogenetic trees were based on complete protein sequences or on distinct domains that were generally included in a sequence LOGO.
To further examine evolutionary relationships among NASP proteins, we reconstructed a protein phylogeny based on complete protein sequences.
While the analysis of the Tc1/mariner transposases was based on complete protein sequences, the low level of conservation among VdHATs and VdMULEs allowed for an evaluation of relatedness based on the conserved hAT and MULE domains only.
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To place this paradoxical pattern into an evolutionary framework, we reconstructed robust molecular phylogenies of pipids based on complete mitochondrial genomes and nine nuclear protein-coding genes that coincided in placing Pseudhymenochirus nested among other pipids.
Analysis of the evolutionary mode of the Pyrococcus genes and proteins was based on complete genome sequences from the P. furiosus, P. horikoshii, and P. abyssi (Table 1), also on those from T. onnurineus deposited in the GenBank database (release 171.0) [ 44].
The management of children with confirmed CMA is based on complete avoidance of cow's milk proteins (CMP) and leaves the physician with several dietary options, none of which, given the prevalence, spectrum and potential seriousness of the condition, can be recommended to all patients [ 2].
6 7 Management of CMA is based on complete avoidance of intact cow's milk protein.
The resulting maximum-likelihood tree showed a great concordance with α-proteobacterial trees based on complete 16S rRNA genes [ 22] or sets of protein families [ 23].
All analyses based on complete data.
Results are based on complete cases only.
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